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68 relations: Affymetrix, Algorithm, Application software, Artistic License, Berkeley Software Distribution, Bioinformatics, Cluster analysis, Collaboration, Complementary DNA, Computational biology, Computational statistics, Computing platform, Debian, DNA annotation, DNA microarray, Fred Hutchinson Cancer Research Center, Free software, GenBank, Gene expression profiling, Gene ontology, Genome, GNU, GNU General Public License, Goal setting, How-to, Human Genome Project, Illumina (company), Interoperability, Knoppix, Linear regression, Linux, List of open-source bioinformatics software, List of sequence alignment software, MacOS, Microarray, Microsoft Windows, Molecular biology, Nonlinear regression, Oligonucleotide, Open-source license, Open-source model, Open-source software development, Plug-in (computing), Prediction, Programming tool, PubMed, R (programming language), Reproducibility, Resampling (statistics), Scalability, ..., Scientific community, Sequence (biology), Single-nucleotide polymorphism, Software bug, Software deployment, Software developer, Software development, Software release life cycle, Software versioning, SourceForge, Statistical graphics, Statistics, Survival analysis, Time series, Tutorial, UniGene, User (computing), Wet lab. Expand index (18 more) »
Affymetrix
Affymetrix, Inc. was an American company that manufactured DNA microarrays; it was based in Santa Clara, California, United States.
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Algorithm
In mathematics and computer science, an algorithm is an unambiguous specification of how to solve a class of problems.
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Application software
An application software (app or application for short) is a computer software designed to perform a group of coordinated functions, tasks, or activities for the benefit of the user.
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Artistic License
The Artistic License (version 1.0) is a software license used for certain free and open-source software packages, most notably the standard implementation of the Perl programming language and most CPAN modules, which are dual-licensed under the Artistic License and the GNU General Public License (GPL).
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Berkeley Software Distribution
Berkeley Software Distribution (BSD) was a Unix operating system derivative developed and distributed by the Computer Systems Research Group (CSRG) of the University of California, Berkeley, from 1977 to 1995.
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Bioinformatics
Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data.
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Cluster analysis
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some sense) to each other than to those in other groups (clusters).
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Collaboration
Collaboration occurs when two or more people or organizations work together--> to realize or achieve a goal.
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Complementary DNA
In genetics, complementary DNA (cDNA) is DNA synthesized from a single stranded RNA (e.g., messenger RNA (mRNA) or microRNA) template in a reaction catalyzed by the enzyme reverse transcriptase.
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Computational biology
Computational biology involves the development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological, behavioral, and social systems.
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Computational statistics
Computational statistics, or statistical computing, is the interface between statistics and computer science.
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Computing platform
A computing platform or digital platform is the environment in which a piece of software is executed.
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Debian
Debian is a Unix-like computer operating system that is composed entirely of free software, and packaged by a group of individuals participating in the Debian Project.
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DNA annotation
DNA annotation or genome annotation is the process of identifying the locations of genes and all of the coding regions in a genome and determining what those genes do.
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DNA microarray
A DNA microarray (also commonly known as DNA chip or biochip) is a collection of microscopic DNA spots attached to a solid surface.
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Fred Hutchinson Cancer Research Center
The Fred Hutchinson Cancer Research Center, also known as Fred Hutch or The Hutch, is a cancer research institute established in 1972 in Seattle, Washington.
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Free software
Free software or libre software is computer software distributed under terms that allow users to run the software for any purpose as well as to study, change, and distribute it and any adapted versions.
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GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.
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Gene expression profiling
In the field of molecular biology, gene expression profiling is the measurement of the activity (the expression) of thousands of genes at once, to create a global picture of cellular function.
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Gene ontology
Gene ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.
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Genome
In the fields of molecular biology and genetics, a genome is the genetic material of an organism.
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GNU
GNU is an operating system and an extensive collection of computer software.
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GNU General Public License
The GNU General Public License (GNU GPL or GPL) is a widely used free software license, which guarantees end users the freedom to run, study, share and modify the software.
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Goal setting
Goal setting involves the development of an action plan designed to motivate and guide a person or group toward a goal.
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How-to
A how-to is an informal, often short, description of how to accomplish a specific task.
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Human Genome Project
The Human Genome Project (HGP) was an international scientific research project with the goal of determining the sequence of nucleotide base pairs that make up human DNA, and of identifying and mapping all of the genes of the human genome from both a physical and a functional standpoint.
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Illumina (company)
Illumina, Inc. is an American company incorporated in April 1998 that develops, manufactures and markets integrated systems for the analysis of genetic variation and biological function.
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Interoperability
Interoperability is a characteristic of a product or system, whose interfaces are completely understood, to work with other products or systems, at present or in the future, in either implementation or access, without any restrictions.
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Knoppix
KNOPPIX is an operating system based on Debian designed to be run directly from a CD / DVD (Live CD) or a USB flash drive (Live USB), one of the first of its kind for any operating system.
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Linear regression
In statistics, linear regression is a linear approach to modelling the relationship between a scalar response (or dependent variable) and one or more explanatory variables (or independent variables).
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Linux
Linux is a family of free and open-source software operating systems built around the Linux kernel.
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List of open-source bioinformatics software
This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.
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List of sequence alignment software
This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment.
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MacOS
macOS (previously and later) is a series of graphical operating systems developed and marketed by Apple Inc. since 2001.
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Microarray
A microarray is a multiplex lab-on-a-chip.
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Microsoft Windows
Microsoft Windows is a group of several graphical operating system families, all of which are developed, marketed, and sold by Microsoft.
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Molecular biology
Molecular biology is a branch of biology which concerns the molecular basis of biological activity between biomolecules in the various systems of a cell, including the interactions between DNA, RNA, proteins and their biosynthesis, as well as the regulation of these interactions.
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Nonlinear regression
In statistics, nonlinear regression is a form of regression analysis in which observational data are modeled by a function which is a nonlinear combination of the model parameters and depends on one or more independent variables.
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Oligonucleotide
Oligonucleotides are short DNA or RNA molecules, oligomers, that have a wide range of applications in genetic testing, research, and forensics.
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Open-source license
An open-source license is a type of license for computer software and other products that allows the source code, blueprint or design to be used, modified and/or shared under defined terms and conditions.
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Open-source model
The open-source model is a decentralized software-development model that encourages open collaboration.
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Open-source software development
Open-source software development is the process by which open-source software, or similar software whose source code is publicly available, is developed.
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Plug-in (computing)
In computing, a plug-in (or plugin, add-in, addin, add-on, addon, or extension) is a software component that adds a specific feature to an existing computer program.
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Prediction
A prediction (Latin præ-, "before," and dicere, "to say"), or forecast, is a statement about a future event.
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Programming tool
A programming tool or software development tool is a computer program that software developers use to create, debug, maintain, or otherwise support other programs and applications.
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PubMed
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics.
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R (programming language)
R is a programming language and free software environment for statistical computing and graphics that is supported by the R Foundation for Statistical Computing.
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Reproducibility
Reproducibility is the closeness of the agreement between the results of measurements of the same measurand carried out under changed conditions of measurement.
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Resampling (statistics)
In statistics, resampling is any of a variety of methods for doing one of the following.
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Scalability
Scalability is the capability of a system, network, or process to handle a growing amount of work, or its potential to be enlarged to accommodate that growth.
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Scientific community
The scientific community is a diverse network of interacting scientists.
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Sequence (biology)
A sequence in biology is the one-dimensional ordering of monomers, covalently linked within a biopolymer; it is also referred to as the primary structure of the biological macromolecule.
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Single-nucleotide polymorphism
A single-nucleotide polymorphism, often abbreviated to SNP (plural), is a variation in a single nucleotide that occurs at a specific position in the genome, where each variation is present to some appreciable degree within a population (e.g. > 1%).
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Software bug
A software bug is an error, flaw, failure or fault in a computer program or system that causes it to produce an incorrect or unexpected result, or to behave in unintended ways.
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Software deployment
Software deployment is all of the activities that make a software system available for use.
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Software developer
A software developer is a person concerned with facets of the software development process, including the research, design, programming, and testing of computer software.
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Software development
Software development is the process of conceiving, specifying, designing, programming, documenting, testing, and bug fixing involved in creating and maintaining applications, frameworks, or other software components.
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Software release life cycle
A software release life cycle is the sum of the stages of development and maturity for a piece of computer software: ranging from its initial development to its eventual release, and including updated versions of the released version to help improve software or fix software bugs still present in the software.
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Software versioning
Software versioning is the process of assigning either unique version names or unique version numbers to unique states of computer software.
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SourceForge
SourceForge is a Web-based service that offers software developers a centralized online location to control and manage free and open-source software projects.
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Statistical graphics
Statistical graphics, also known as graphical techniques, are graphics in the field of statistics used to visualize quantitative data.
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Statistics
Statistics is a branch of mathematics dealing with the collection, analysis, interpretation, presentation, and organization of data.
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Survival analysis
Survival analysis is a branch of statistics for analyzing the expected duration of time until one or more events happen, such as death in biological organisms and failure in mechanical systems.
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Time series
A time series is a series of data points indexed (or listed or graphed) in time order.
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Tutorial
A tutorial is a method of transferring knowledge and may be used as a part of a learning process.
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UniGene
UniGene is an NCBI database of the transcriptome and thus, despite the name, not primarily a database for genes.
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User (computing)
A user is a person who utilizes a computer or network service.
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Wet lab
A wet lab is a type of laboratory where it is necessary to handle various types of chemicals and potential "wet" hazards, so the room has to be carefully designed, constructed, and controlled to avoid spillage and contamination.
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References
[1] https://en.wikipedia.org/wiki/Bioconductor
