Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache incubator.
In chemistry, the ball-and-stick model is a molecular model of a chemical substance which is to display both the three-dimensional position of the atoms and the bonds between them.
Biochemistry, sometimes called biological chemistry, is the study of chemical processes within and relating to living organisms.
The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).
This article discusses some common molecular file formats, including usage and converting between them.
Chemical Markup Language (ChemML or CML) is an approach to managing molecular information using tools such as XML and Java.
Chemical table file (CT File) is a family of text-based chemical file formats that describe molecules and chemical reactions.
Chemistry is the scientific discipline involved with compounds composed of atoms, i.e. elements, and molecules, i.e. combinations of atoms: their composition, structure, properties, behavior and the changes they undergo during a reaction with other compounds.
The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics.
This is a list of computer programs that are predominantly used for molecular mechanics calculations.
In computing, cross-platform software (also multi-platform software or platform-independent software) is computer software that is implemented on multiple computing platforms.
Crystallographic Information File (CIF) is a standard text file format for representing crystallographic information, promulgated by the International Union of Crystallography (IUCr).
Mozilla Firefox (or simply Firefox) is a free and open-source web browser developed by Mozilla Foundation and its subsidiary, Mozilla Corporation.
Mozilla Firefox 2 is a version of Firefox, a web browser released on October 24, 2006 by the Mozilla Corporation.
Free and open-source software (FOSS) is software that can be classified as both free software and open-source software.
The GNU Lesser General Public License (LGPL) is a free software license published by the Free Software Foundation (FSF).
Google Chrome is a freeware web browser developed by Google LLC.
HTML5 is a markup language used for structuring and presenting content on the World Wide Web.
Internet Explorer (formerly Microsoft Internet Explorer and Windows Internet Explorer, commonly abbreviated IE or MSIE) is a series of graphical web browsers developed by Microsoft and included in the Microsoft Windows line of operating systems, starting in 1995.
Java is a general-purpose computer-programming language that is concurrent, class-based, object-oriented, and specifically designed to have as few implementation dependencies as possible.
Java is a set of computer software and specifications developed by James Gosling at Sun Microsystems, which was later acquired by the Oracle Corporation, that provides a system for developing application software and deploying it in a cross-platform computing environment.
Linux is a family of free and open-source software operating systems built around the Linux kernel.
This is a list of software systems that are used for visualizing macromolecules.
Mac OS 9 is the ninth and final major release of Apple's classic Mac OS operating system.
macOS (previously and later) is a series of graphical operating systems developed and marketed by Apple Inc. since 2001.
MDL Chime is a free plugin used by web browsers to display the three-dimensional structures of molecules.
Microsoft Windows is a group of several graphical operating system families, all of which are developed, marketed, and sold by Microsoft.
Molecular graphics (MG) is the discipline and philosophy of studying molecules and their properties through graphical representation.
Molecular modelling encompasses all methods, theoretical and computational, used to model or mimic the behaviour of molecules.
A molecule is an electrically neutral group of two or more atoms held together by chemical bonds.
A molecule editor is a computer program for creating and modifying representations of chemical structures.
Netscape Communicator (or Netscape 4) is a discontinued Internet suite produced by Netscape Communications Corporation, and was the fourth major release in the Netscape line of browsers.
Opera is a web browser for Windows, macOS, and Linux operating systems developed by Opera Software AS.
In computing, a plug-in (or plugin, add-in, addin, add-on, addon, or extension) is a software component that adds a specific feature to an existing computer program.
The Protein Data Bank (pdb) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank.
Proteopedia is a wiki, 3D encyclopedia of proteins and other molecules.
PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano.
Ribbon diagrams, also known as Richardson diagrams, are 3D schematic representations of protein structure and are one of the most common methods of protein depiction used today.
Safari is a web browser developed by Apple based on the WebKit engine.
SAMSON (Software for Adaptive Modeling and Simulation Of Nanosystems) is a computer software platform for computational nanoscience being developed by the NANO-D group at the French Institute for Research in Computer Science and Automation (INRIA).
Computer software, or simply software, is a generic term that refers to a collection of data or computer instructions that tell the computer how to work, in contrast to the physical hardware from which the system is built, that actually performs the work.
A software development kit (SDK or devkit) is typically a set of software development tools that allows the creation of applications for a certain software package, software framework, hardware platform, computer system, video game console, operating system, or similar development platform.
In chemistry, a space-filling model, also known as a calotte model, is a type of three-dimensional (3D) molecular model where the atoms are represented by spheres whose radii are proportional to the radii of the atoms and whose center-to-center distances are proportional to the distances between the atomic nuclei, all in the same scale.
Streptavidin is a 52.8 kDa protein purified from the bacterium Streptomyces avidinii.
Unix (trademarked as UNIX) is a family of multitasking, multiuser computer operating systems that derive from the original AT&T Unix, development starting in the 1970s at the Bell Labs research center by Ken Thompson, Dennis Ritchie, and others.
A web browser (commonly referred to as a browser) is a software application for accessing information on the World Wide Web.
3D computer graphics or three-dimensional computer graphics, (in contrast to 2D computer graphics) are graphics that use a three-dimensional representation of geometric data (often Cartesian) that is stored in the computer for the purposes of performing calculations and rendering 2D images.