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21 relations: Bioinformatics, Computational genomics, Computing platform, Digital image processing, Force-directed graph drawing, Gene expression, Gene ontology, GNU Lesser General Public License, Graph drawing, Graph Modelling Language, Java (programming language), Java (software platform), JavaScript, KEGG, Metabolic network modelling, Open-source model, Plug-in (computing), Protein–protein interaction prediction, TRANSFAC, Visualization (graphics), XGMML.
Bioinformatics
Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data.
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Computational genomics
Computational genomics (often referred to as Computational Genetics) refers to the use of computational and statistical analysis to decipher biology from genome sequences and related data, including both DNA and RNA sequence as well as other "post-genomic" data (i.e., experimental data obtained with technologies that require the genome sequence, such as genomic DNA microarrays).
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Computing platform
A computing platform or digital platform is the environment in which a piece of software is executed.
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Digital image processing
In computer science, Digital image processing is the use of computer algorithms to perform image processing on digital images.
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Force-directed graph drawing
Force-directed graph drawing algorithms are a class of algorithms for drawing graphs in an aesthetically-pleasing way.
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Gene expression
Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product.
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Gene ontology
Gene ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.
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GNU Lesser General Public License
The GNU Lesser General Public License (LGPL) is a free software license published by the Free Software Foundation (FSF).
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Graph drawing
Graph drawing is an area of mathematics and computer science combining methods from geometric graph theory and information visualization to derive two-dimensional depictions of graphs arising from applications such as social network analysis, cartography, linguistics, and bioinformatics.
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Graph Modelling Language
Graph Modeling Language (GML) is a hierarchical ASCII-based file format for describing graphs.
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Java (programming language)
Java is a general-purpose computer-programming language that is concurrent, class-based, object-oriented, and specifically designed to have as few implementation dependencies as possible.
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Java (software platform)
Java is a set of computer software and specifications developed by James Gosling at Sun Microsystems, which was later acquired by the Oracle Corporation, that provides a system for developing application software and deploying it in a cross-platform computing environment.
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JavaScript
JavaScript, often abbreviated as JS, is a high-level, interpreted programming language.
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KEGG
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.
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Metabolic network modelling
Metabolic network reconstruction and simulation allows for an in-depth insight into the molecular mechanisms of a particular organism.
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Open-source model
The open-source model is a decentralized software-development model that encourages open collaboration.
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Plug-in (computing)
In computing, a plug-in (or plugin, add-in, addin, add-on, addon, or extension) is a software component that adds a specific feature to an existing computer program.
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Protein–protein interaction prediction
Protein–protein interaction prediction is a field combining bioinformatics and structural biology in an attempt to identify and catalog physical interactions between pairs or groups of proteins.
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TRANSFAC
TRANSFAC (TRANScription FACtor database) is a manually curated database of eukaryotic transcription factors, their genomic binding sites and DNA binding profiles.
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Visualization (graphics)
Visualization or visualisation (see spelling differences) is any technique for creating images, diagrams, or animations to communicate a message.
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XGMML
XGMML (the eXtensible Graph Markup and '''M'''odeling '''L'''anguage) is an XML application based on GML which is used for graph description.
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References
[1] https://en.wikipedia.org/wiki/Cytoscape
