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Nucleic acid tertiary structure

Index Nucleic acid tertiary structure

Nucleic acid tertiary structure is the three-dimensional shape of a nucleic acid polymer. [1]

77 relations: A-DNA, Active site, Adenine, Adenosine, Aptamer, Ångström, Bacteria, Base pair, Biomolecular structure, Calcium, Crystal structure, Cytosine, DNA, DNA nanotechnology, DNA origami, DNA replication, Electrostatics, Francis Crick, G-quadruplex, Gene expression, Genetic recombination, Group I catalytic intron, Group II intron, Guanine, Guanosine, Hammerhead ribozyme, Holliday junction, Hoogsteen base pair, Hydrogen bond, Hydrophobic effect, In vivo, Ion, James Watson, Kissing stem-loop, Ligand, Magnesium, Magnesium in biology, Manganese, Nature (journal), Nucleic acid, Nucleic acid design, Nucleic acid double helix, Nucleic acid secondary structure, Nucleic acid structure prediction, Nucleobase, Nucleoside, Nucleotide, Oligomer, Phosphate, Potassium, ..., Prokaryotic large ribosomal subunit, Pseudoknot, Purine, Ribonucleotide, Ribose, Ribosome, Riboswitch, Ribozyme, RNA, SAM-II riboswitch, Slippery sequence, Sodium, Stem-loop, Telomerase RNA component, Telomere, Terbium, Tetraloop, Transcription (biology), Transfer RNA, Triple helix, Triple-stranded DNA, Untranslated region, Valence (chemistry), Van der Waals force, Wobble base pair, Z-DNA, 23S ribosomal RNA. Expand index (27 more) »

A-DNA

A-DNA is one of the possible double helical structures which DNA can adopt.

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Active site

In biology, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction.

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Adenine

Adenine (A, Ade) is a nucleobase (a purine derivative).

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Adenosine

Adenosine is both a chemical found in many living systems and a medication.

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Aptamer

Aptamers (from the Latin aptus – fit, and Greek meros – part) are oligonucleotide or peptide molecules that bind to a specific target molecule.

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Ångström

The ångström or angstrom is a unit of length equal to (one ten-billionth of a metre) or 0.1 nanometre.

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Bacteria

Bacteria (common noun bacteria, singular bacterium) is a type of biological cell.

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Base pair

A base pair (bp) is a unit consisting of two nucleobases bound to each other by hydrogen bonds.

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Biomolecular structure

Biomolecular structure is the intricate folded, three-dimensional shape that is formed by a molecule of protein, DNA, or RNA, and that is important to its function.

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Calcium

Calcium is a chemical element with symbol Ca and atomic number 20.

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Crystal structure

In crystallography, crystal structure is a description of the ordered arrangement of atoms, ions or molecules in a crystalline material.

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Cytosine

Cytosine (C) is one of the four main bases found in DNA and RNA, along with adenine, guanine, and thymine (uracil in RNA).

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DNA

Deoxyribonucleic acid (DNA) is a thread-like chain of nucleotides carrying the genetic instructions used in the growth, development, functioning and reproduction of all known living organisms and many viruses.

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DNA nanotechnology

DNA nanotechnology is the design and manufacture of artificial nucleic acid structures for technological uses.

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DNA origami

DNA origami is the nanoscale folding of DNA to create non-arbitrary two- and three-dimensional shapes at the nanoscale.

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DNA replication

In molecular biology, DNA replication is the biological process of producing two identical replicas of DNA from one original DNA molecule.

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Electrostatics

Electrostatics is a branch of physics that studies electric charges at rest.

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Francis Crick

Francis Harry Compton Crick (8 June 1916 – 28 July 2004) was a British molecular biologist, biophysicist, and neuroscientist, most noted for being a co-discoverer of the structure of the DNA molecule in 1953 with James Watson, work which was based partly on fundamental studies done by Rosalind Franklin, Raymond Gosling and Maurice Wilkins.

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G-quadruplex

In molecular biology, G-quadruplex secondary structures are formed in nucleic acids by sequences that are rich in guanine.

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Gene expression

Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product.

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Genetic recombination

Genetic recombination (aka genetic reshuffling) is the production of offspring with combinations of traits that differ from those found in either parent.

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Group I catalytic intron

Group I introns are large self-splicing ribozymes.

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Group II intron

Group II introns are a large class of self-catalytic ribozymes and mobile genetic elements found within the genes of all three domains of life.

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Guanine

Guanine (or G, Gua) is one of the four main nucleobases found in the nucleic acids DNA and RNA, the others being adenine, cytosine, and thymine (uracil in RNA).

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Guanosine

Guanosine is a purine nucleoside comprising guanine attached to a ribose (ribofuranose) ring via a β-N9-glycosidic bond.

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Hammerhead ribozyme

The hammerhead ribozyme is an RNA motif that catalyzes reversible cleavage and ligation reactions at a specific site within an RNA molecule.

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Holliday junction

A Holliday junction is a branched nucleic acid structure that contains four double-stranded arms joined together.

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Hoogsteen base pair

A Hoogsteen base pair is a variation of base-pairing in nucleic acids such as the A•T pair.

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Hydrogen bond

A hydrogen bond is a partially electrostatic attraction between a hydrogen (H) which is bound to a more electronegative atom such as nitrogen (N), oxygen (O), or fluorine (F), and another adjacent atom bearing a lone pair of electrons.

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Hydrophobic effect

The hydrophobic effect is the observed tendency of nonpolar substances to aggregate in an aqueous solution and exclude water molecules.

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In vivo

Studies that are in vivo (Latin for "within the living"; often not italicized in English) are those in which the effects of various biological entities are tested on whole, living organisms or cells, usually animals, including humans, and plants, as opposed to a tissue extract or dead organism.

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Ion

An ion is an atom or molecule that has a non-zero net electrical charge (its total number of electrons is not equal to its total number of protons).

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James Watson

James Dewey Watson (born April 6, 1928) is an American molecular biologist, geneticist and zoologist, best known as one of the co-discoverers of the structure of DNA in 1953 with Francis Crick and Rosalind Franklin.

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Kissing stem-loop

A kissing stem-loop, or kissing interaction, is formed in RNA when two bases between two hairpin loops pair.

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Ligand

In coordination chemistry, a ligand is an ion or molecule (functional group) that binds to a central metal atom to form a coordination complex.

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Magnesium

Magnesium is a chemical element with symbol Mg and atomic number 12.

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Magnesium in biology

Magnesium is an essential element in biological systems.

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Manganese

Manganese is a chemical element with symbol Mn and atomic number 25.

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Nature (journal)

Nature is a British multidisciplinary scientific journal, first published on 4 November 1869.

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Nucleic acid

Nucleic acids are biopolymers, or small biomolecules, essential to all known forms of life.

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Nucleic acid design

Nucleic acid design is the process of generating a set of nucleic acid base sequences that will associate into a desired conformation.

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Nucleic acid double helix

In molecular biology, the term double helix refers to the structure formed by double-stranded molecules of nucleic acids such as DNA.

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Nucleic acid secondary structure

Nucleic acid secondary structure is the basepairing interactions within a single nucleic acid polymer or between two polymers.

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Nucleic acid structure prediction

Nucleic acid structure prediction is a computational method to determine secondary and tertiary nucleic acid structure from its sequence.

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Nucleobase

Nucleobases, also known as nitrogenous bases or often simply bases, are nitrogen-containing biological compounds that form nucleosides, which in turn are components of nucleotides, with all of these monomers constituting the basic building blocks of nucleic acids.

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Nucleoside

Nucleosides are glycosylamines that can be thought of as nucleotides without a phosphate group.

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Nucleotide

Nucleotides are organic molecules that serve as the monomer units for forming the nucleic acid polymers deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both of which are essential biomolecules within all life-forms on Earth.

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Oligomer

An oligomer (oligo-, "a few" + -mer, "parts") is a molecular complex of chemicals that consists of a few monomer units, in contrast to a polymer, where the number of monomers is, in principle, infinite.

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Phosphate

A phosphate is chemical derivative of phosphoric acid.

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Potassium

Potassium is a chemical element with symbol K (from Neo-Latin kalium) and atomic number 19.

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Prokaryotic large ribosomal subunit

50S is the larger subunit of the 70S ribosome of prokaryotes.

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Pseudoknot

A pseudoknot is a nucleic acid secondary structure containing at least two stem-loop structures in which half of one stem is intercalated between the two halves of another stem.

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Purine

A purine is a heterocyclic aromatic organic compound that consists of a pyrimidine ring fused to an imidazole ring.

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Ribonucleotide

In biochemistry, a ribonucleotide or ribotide is a nucleotide containing ribose as its pentose component.

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Ribose

Ribose is a carbohydrate with the formula C5H10O5; specifically, it is a pentose monosaccharide (simple sugar) with linear form H−(C.

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Ribosome

The ribosome is a complex molecular machine, found within all living cells, that serves as the site of biological protein synthesis (translation).

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Riboswitch

In molecular biology, a riboswitch is a regulatory segment of a messenger RNA molecule that binds a small molecule, resulting in a change in production of the proteins encoded by the mRNA.

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Ribozyme

Ribozymes (ribonucleic acid enzymes) are RNA molecules that are capable of catalyzing specific biochemical reactions, similar to the action of protein enzymes.

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RNA

Ribonucleic acid (RNA) is a polymeric molecule essential in various biological roles in coding, decoding, regulation, and expression of genes.

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SAM-II riboswitch

The SAM-II riboswitch is a RNA element found predominantly in alpha-proteobacteria that binds S-adenosyl methionine (SAM).

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Slippery sequence

A slippery sequence is a small section of codon nucleotide sequences (usually UUUAAAC) that controls the rate of ribosomal frameshifting.

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Sodium

Sodium is a chemical element with symbol Na (from Latin natrium) and atomic number 11.

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Stem-loop

Stem-loop intramolecular base pairing is a pattern that can occur in single-stranded DNA or, more commonly, in RNA.

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Telomerase RNA component

| Name.

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Telomere

A telomere is a region of repetitive nucleotide sequences at each end of a chromosome, which protects the end of the chromosome from deterioration or from fusion with neighboring chromosomes.

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Terbium

Terbium is a chemical element with symbol Tb and atomic number 65.

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Tetraloop

Tetraloops are a type of four-base hairpin loop motifs in RNA secondary structure that cap many double helices.

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Transcription (biology)

Transcription is the first step of gene expression, in which a particular segment of DNA is copied into RNA (especially mRNA) by the enzyme RNA polymerase.

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Transfer RNA

A transfer RNA (abbreviated tRNA and formerly referred to as sRNA, for soluble RNA) is an adaptor molecule composed of RNA, typically 76 to 90 nucleotides in length, that serves as the physical link between the mRNA and the amino acid sequence of proteins.

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Triple helix

In geometry, a triple helix (plural triple helices) is a set of three congruent geometrical helices with the same axis, differing by a translation along the axis.

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Triple-stranded DNA

Triple-stranded DNA is a DNA structure in which three oligonucleotides wind around each other and form a triple helix.

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Untranslated region

In molecular genetics, an untranslated region (or UTR) refers to either of two sections, one on each side of a coding sequence on a strand of mRNA.

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Valence (chemistry)

In chemistry, the valence or valency of an element is a measure of its combining power with other atoms when it forms chemical compounds or molecules.

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Van der Waals force

In molecular physics, the van der Waals forces, named after Dutch scientist Johannes Diderik van der Waals, are distance-dependent interactions between atoms or molecules.

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Wobble base pair

A wobble base pair is a pairing between two nucleotides in RNA molecules that does not follow Watson-Crick base pair rules.

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Z-DNA

Z-DNA is one of the many possible double helical structures of DNA.

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23S ribosomal RNA

The 23S rRNA is a 2904 nt long (in E. coli) component of the large subunit (50S) of the bacterial/archean ribosome.

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Redirects here:

Base stacking, Coaxial stacking, RNA Tertiary Structure, RNA tertiary structure.

References

[1] https://en.wikipedia.org/wiki/Nucleic_acid_tertiary_structure

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