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Activity-based proteomics

Index Activity-based proteomics

Activity-based proteomics, or activity-based protein profiling (ABPP) is a functional proteomic technology that uses chemical probes that react with mechanistically related classes of enzymes. [1]

23 relations: Active site, Alkyne, Azide, Azide-alkyne Huisgen cycloaddition, Bioconjugate Chemistry, Biotin, Click chemistry, Covalent bond, Diisopropyl fluorophosphate, Electrophile, Enzyme, Enzyme inhibitor, Fluorophore, Mass spectrometry, Metalloproteinase, Methoxy arachidonyl fluorophosphonate, Nucleophile, Post-translational modification, Proceedings of the National Academy of Sciences of the United States of America, Proteomics, Serine protease, Tandem mass spectrometry, Zymogen.

Active site

In biology, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction.

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Alkyne

In organic chemistry, an alkyne is an unsaturated hydrocarbon containing at least one carbon—carbon triple bond.

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Azide

Azide is the anion with the formula N. It is the conjugate base of hydrazoic acid (HN3).

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Azide-alkyne Huisgen cycloaddition

The azide-alkyne Huisgen cycloaddition is a 1,3-dipolar cycloaddition between an azide and a terminal or internal alkyne to give a 1,2,3-triazole.

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Bioconjugate Chemistry

Bioconjugate Chemistry is a peer-reviewed scientific journal, published since 1990 by the American Chemical Society.

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Biotin

Biotin is a water-soluble B vitamin, also called vitamin B7 and formerly known as vitamin H or coenzyme R. Biotin is composed of a ureido ring fused with a tetrahydrothiophene ring.

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Click chemistry

In chemical synthesis, "click" chemistry is a class of biocompatible small molecule reactions commonly used in bioconjugation, allowing the joining of substrates of choice with specific biomolecules.

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Covalent bond

A covalent bond, also called a molecular bond, is a chemical bond that involves the sharing of electron pairs between atoms.

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Diisopropyl fluorophosphate

Diisopropyl fluorophosphate is an oily, colorless liquid with the chemical formula C6H14FO3P.

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Electrophile

In organic chemistry, an electrophile is a reagent attracted to electrons.

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Enzyme

Enzymes are macromolecular biological catalysts.

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Enzyme inhibitor

4QI9) An enzyme inhibitor is a molecule that binds to an enzyme and decreases its activity.

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Fluorophore

A fluorophore (or fluorochrome, similarly to a chromophore) is a fluorescent chemical compound that can re-emit light upon light excitation.

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Mass spectrometry

Mass spectrometry (MS) is an analytical technique that ionizes chemical species and sorts the ions based on their mass-to-charge ratio.

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Metalloproteinase

A metalloproteinase, or metalloprotease, is any protease enzyme whose catalytic mechanism involves a metal.

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Methoxy arachidonyl fluorophosphonate

Methoxy arachidonyl fluorophosphonate, commonly referred as MAFP, is an irreversible active site-directed enzyme inhibitor that inhibits nearly all serine hydrolases and serine proteases.

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Nucleophile

Nucleophile is a chemical species that donates an electron pair to an electrophile to form a chemical bond in relation to a reaction.

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Post-translational modification

Post-translational modification (PTM) refers to the covalent and generally enzymatic modification of proteins following protein biosynthesis.

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Proceedings of the National Academy of Sciences of the United States of America

Proceedings of the National Academy of Sciences of the United States of America (PNAS) is the official scientific journal of the National Academy of Sciences, published since 1915.

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Proteomics

Proteomics is the large-scale study of proteins.

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Serine protease

Serine proteases (or serine endopeptidases) are enzymes that cleave peptide bonds in proteins, in which serine serves as the nucleophilic amino acid at the (enzyme's) active site.

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Tandem mass spectrometry

Tandem mass spectrometry, also known as MS/MS or MS2, involves multiple steps of mass spectrometry selection, with some form of fragmentation occurring in between the stages.

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Zymogen

A zymogen, also called a proenzyme, is an inactive precursor of an enzyme.

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Redirects here:

Activity based probe, Activity based protein profiling, Activity based proteomics.

References

[1] https://en.wikipedia.org/wiki/Activity-based_proteomics

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