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74 relations: Algorithm, Amino acid, Artificial life, Artificial neural network, École Polytechnique Fédérale de Lausanne, Bioinformatics, Biological data visualization, Biological organisation, Biomass, BioModels, Biomolecular structure, BioPAX, Biosimulation, Biotechnology, Blue Brain Project, Blue Gene, Brain, Carbon, CASP, Cell (biology), Cell membrane, CellML, Chemical element, Chemical species, Comparison of software for molecular mechanics modeling, Complex system, Computer simulation, Concentration, Consciousness, Data structure, Drug design, Ecosystem, Ecotoxicology, Emergence, Enzyme, Epidemic, Food web, Gene regulatory network, Gillespie algorithm, Infection, Inventory, L-system, Lausanne, Mathematical and theoretical biology, Mathematical physiology, Mathematics, Medicine, Membrane computing, Metabolic network, Metabolism, ..., Mycoplasma genitalium, National Science Foundation, Neuron, Neuron (software), Nitrogen, Nutrient, OpenWorm, Organism, Parameter, Phosphorus, Predictive modelling, Protein, Protein structure prediction, Reverse engineering, Richard Bonneau, SBML, Signal transduction, Stochastic simulation, Supercomputer, Supercomputing and Visualization Center of Madrid, Systems biology, Theoretical chemistry, Trophic level, Vaccination. Expand index (24 more) »
Algorithm
In mathematics and computer science, an algorithm is an unambiguous specification of how to solve a class of problems.
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Amino acid
Amino acids are organic compounds containing amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) specific to each amino acid.
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Artificial life
Artificial life (often abbreviated ALife or A-Life) is a field of study wherein researchers examine systems related to natural life, its processes, and its evolution, through the use of simulations with computer models, robotics, and biochemistry.
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Artificial neural network
Artificial neural networks (ANNs) or connectionist systems are computing systems vaguely inspired by the biological neural networks that constitute animal brains.
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École Polytechnique Fédérale de Lausanne
The École polytechnique fédérale de Lausanne (EPFL) is a research institute and university in Lausanne, Switzerland, that specializes in natural sciences and engineering.
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Bioinformatics
Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data.
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Biological data visualization
Biology data visualization is a branch of bioinformatics concerned with the application of computer graphics, scientific visualization, and information visualization to different areas of the life sciences.
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Biological organisation
Biological organization is the hierarchy of complex biological structures and systems that define life using a reductionistic approach.
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Biomass
Biomass is an industry term for getting energy by burning wood, and other organic matter.
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BioModels
BioModels is a free and open-source repository for storing, exchanging and retrieving quantitative models of biological interest created in 2006.
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Biomolecular structure
Biomolecular structure is the intricate folded, three-dimensional shape that is formed by a molecule of protein, DNA, or RNA, and that is important to its function.
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BioPAX
BioPAX (Biological Pathway Exchange) is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level.
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Biosimulation
Biosimulation is computer-aided mathematical simulation of biological processes and systems and thus is an integral part of systems biology.
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Biotechnology
Biotechnology is the broad area of science involving living systems and organisms to develop or make products, or "any technological application that uses biological systems, living organisms, or derivatives thereof, to make or modify products or processes for specific use" (UN Convention on Biological Diversity, Art. 2).
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Blue Brain Project
The Blue Brain, a Swiss national brain initiative, aims to create a digital reconstruction of the brain by reverse-engineering mammalian brain circuitry.
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Blue Gene
Blue Gene is an IBM project aimed at designing supercomputers that can reach operating speeds in the PFLOPS (petaFLOPS) range, with low power consumption.
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Brain
The brain is an organ that serves as the center of the nervous system in all vertebrate and most invertebrate animals.
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Carbon
Carbon (from carbo "coal") is a chemical element with symbol C and atomic number 6.
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CASP
Critical Assessment of protein Structure Prediction, or CASP, is a community-wide, worldwide experiment for protein structure prediction taking place every two years since 1994.
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Cell (biology)
The cell (from Latin cella, meaning "small room") is the basic structural, functional, and biological unit of all known living organisms.
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Cell membrane
The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates the interior of all cells from the outside environment (the extracellular space).
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CellML
CellML is an XML based markup language for describing mathematical models.
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Chemical element
A chemical element is a species of atoms having the same number of protons in their atomic nuclei (that is, the same atomic number, or Z).
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Chemical species
A chemical species is a chemical substance or ensemble composed of chemically identical molecular entities that can explore the same set of molecular energy levels on a characteristic or delineated time scale.
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Comparison of software for molecular mechanics modeling
This is a list of computer programs that are predominantly used for molecular mechanics calculations.
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Complex system
A complex system is a system composed of many components which may interact with each other.
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Computer simulation
Computer simulation is the reproduction of the behavior of a system using a computer to simulate the outcomes of a mathematical model associated with said system.
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Concentration
In chemistry, concentration is the abundance of a constituent divided by the total volume of a mixture.
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Consciousness
Consciousness is the state or quality of awareness, or, of being aware of an external object or something within oneself.
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Data structure
In computer science, a data structure is a data organization and storage format that enables efficient access and modification.
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Drug design
Drug design, often referred to as rational drug design or simply rational design, is the inventive process of finding new medications based on the knowledge of a biological target.
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Ecosystem
An ecosystem is a community made up of living organisms and nonliving components such as air, water, and mineral soil.
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Ecotoxicology
Ecotoxicology is the study of the effects of toxic chemicals on biological organisms, especially at the population, community, ecosystem, and biosphere levels.
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Emergence
In philosophy, systems theory, science, and art, emergence occurs when "the whole is greater than the sum of the parts," meaning the whole has properties its parts do not have.
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Enzyme
Enzymes are macromolecular biological catalysts.
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Epidemic
An epidemic (from Greek ἐπί epi "upon or above" and δῆμος demos "people") is the rapid spread of infectious disease to a large number of people in a given population within a short period of time, usually two weeks or less.
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Food web
A food web (or food cycle) is a natural interconnection of food chains and a graphical representation (usually an image) of what-eats-what in an ecological community.
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Gene regulatory network
A gene (or genetic) regulatory network (GRN) is a collection of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression levels of mRNA and proteins.
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Gillespie algorithm
In probability theory, the Gillespie algorithm (or occasionally the Doob-Gillespie algorithm) generates a statistically correct trajectory (possible solution) of a stochastic equation.
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Infection
Infection is the invasion of an organism's body tissues by disease-causing agents, their multiplication, and the reaction of host tissues to the infectious agents and the toxins they produce.
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Inventory
Inventory (American English) or stock (British English) is the goods and materials that a business holds for the ultimate goal of resale (or repair).
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L-system
An L-system or Lindenmayer system is a parallel rewriting system and a type of formal grammar.
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Lausanne
Lausanne (Lausanne Losanna, Losanna) is a city in the French-speaking part of Switzerland, and the capital and biggest city of the canton of Vaud.
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Mathematical and theoretical biology
Mathematical and theoretical biology is a branch of biology which employs theoretical analysis, mathematical models and abstractions of the living organisms to investigate the principles that govern the structure, development and behavior of the systems, as opposed to experimental biology which deals with the conduction of experiments to prove and validate the scientific theories.
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Mathematical physiology
Mathematical physiology is an interdisciplinary science.
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Mathematics
Mathematics (from Greek μάθημα máthēma, "knowledge, study, learning") is the study of such topics as quantity, structure, space, and change.
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Medicine
Medicine is the science and practice of the diagnosis, treatment, and prevention of disease.
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Membrane computing
Membrane computing (or MC) is an area within computer science that seeks to discover new computational models from the study of biological cells, particularly of the cellular membranes.
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Metabolic network
A metabolic network is the complete set of metabolic and physical processes that determine the physiological and biochemical properties of a cell.
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Metabolism
Metabolism (from μεταβολή metabolē, "change") is the set of life-sustaining chemical transformations within the cells of organisms.
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Mycoplasma genitalium
Mycoplasma genitalium, commonly known as Mgen, is a sexually transmitted, small and pathogenic bacterium that lives on the ciliated epithelial cells of the urinary and genital tracts in humans.
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National Science Foundation
The National Science Foundation (NSF) is a United States government agency that supports fundamental research and education in all the non-medical fields of science and engineering.
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Neuron
A neuron, also known as a neurone (British spelling) and nerve cell, is an electrically excitable cell that receives, processes, and transmits information through electrical and chemical signals.
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Neuron (software)
Neuron is a simulation environment for modeling individual and networks of neurons.
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Nitrogen
Nitrogen is a chemical element with symbol N and atomic number 7.
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Nutrient
A nutrient is a substance used by an organism to survive, grow, and reproduce.
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OpenWorm
OpenWorm is an international open science project to simulate the roundworm Caenorhabditis elegans at the cellular level as a simulation.
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Organism
In biology, an organism (from Greek: ὀργανισμός, organismos) is any individual entity that exhibits the properties of life.
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Parameter
A parameter (from the Ancient Greek παρά, para: "beside", "subsidiary"; and μέτρον, metron: "measure"), generally, is any characteristic that can help in defining or classifying a particular system (meaning an event, project, object, situation, etc.). That is, a parameter is an element of a system that is useful, or critical, when identifying the system, or when evaluating its performance, status, condition, etc.
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Phosphorus
Phosphorus is a chemical element with symbol P and atomic number 15.
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Predictive modelling
Predictive modelling uses statistics to predict outcomes.
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Protein
Proteins are large biomolecules, or macromolecules, consisting of one or more long chains of amino acid residues.
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Protein structure prediction
Protein structure prediction is the inference of the three-dimensional structure of a protein from its amino acid sequence—that is, the prediction of its folding and its secondary and tertiary structure from its primary structure.
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Reverse engineering
Reverse engineering, also called back engineering, is the process by which a man-made object is deconstructed to reveal its designs, architecture, or to extract knowledge from the object; similar to scientific research, the only difference being that scientific research is about a natural phenomenon.
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Richard Bonneau
Richard Bonneau is an American computational biologist and data scientist whose primary research is in the following areas: learning networks from functional genomics data, predicting and designing protein and peptiodomimetic structure and applying data science to social networks.
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SBML
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes.
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Signal transduction
Signal transduction is the process by which a chemical or physical signal is transmitted through a cell as a series of molecular events, most commonly protein phosphorylation catalyzed by protein kinases, which ultimately results in a cellular response.
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Stochastic simulation
A stochastic simulation is a simulation that traces the evolution of variables that can change stochastically (randomly) with certain probabilities.
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Supercomputer
A supercomputer is a computer with a high level of performance compared to a general-purpose computer.
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Supercomputing and Visualization Center of Madrid
The Supercomputing and Visualization Center of Madrid (CeSViMa) also called Madrid Supercomputing and Visualization Center (In Spanish, Centro de Supercomputación y Visualización de Madrid) depends on the Computer Science Faculty of the Technical University of Madrid.
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Systems biology
Systems biology is the computational and mathematical modeling of complex biological systems.
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Theoretical chemistry
Theoretical chemistry is a branch of chemistry, which develops theoretical generalizations that are part of the theoretical arsenal of modern chemistry, for example, the concept of chemical bonding, chemical reaction, valence, the surface of potential energy, molecular orbitals, orbital interactions, molecule activation etc.
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Trophic level
The trophic level of an organism is the position it occupies in a food chain.
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Vaccination
Vaccination is the administration of antigenic material (a vaccine) to stimulate an individual's immune system to develop adaptive immunity to a pathogen.
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Computational biomodeling, Computational systems biology, Modeling biological systems, Systems biology modeling.
References
[1] https://en.wikipedia.org/wiki/Modelling_biological_systems
